spac.visualization.heatmap(adata, column, layer=None, **kwargs)

Plot the heatmap of the mean feature of cells that belong to a column.

Parameters:

• adata (anndata.AnnData) – The AnnData object.

• column (str) – Name of member of adata.obs to plot the histogram.

• layer (str, default None) – The name of the adata layer to use to calculate the mean feature.

• **kwargs – Parameters passed to seaborn heatmap function.

Returns:

• pandas.DataFrame – A dataframe tha has the labels as indexes the mean feature for every marker.

• matplotlib.figure.Figure – The figure of the heatmap.

• matplotlib.axes._subplots.AxesSubplot – The AsxesSubplot of the heatmap.