spac modules
- add_pin_color_rules
- add_rescaled_features
- append_annotation
- bin2cat
- calculate_centroid
- combine_annotations
- combine_dfs
- concatinate_regions
- downsample_cells
- ingest_cells
- load_csv_files
- rescale_features
- spac.data_utils module
- _select_values_anndata
- _select_values_dataframe
- select_values
- subtract_min_per_region
- subtract_min_quantile
- summarize_dataframe
- apply_phenotypes
- assign_manual_phenotypes
- combine_phenotypes
- decode_phenotype
- generate_phenotypes_dict
- is_binary_0_1
- spac.phenotyping module
- calculate_nearest_neighbor
- _neighborhood_profile_core
- neighborhood_profile
- ripley_l
- spac.spatial_analysis module
- spatial_interaction
- apply_per_batch
- arcsinh_transformation_core
- arcsinh_transformation
- batch_normalize
- get_cluster_info
- knn_clustering
- normalize_features_core
- normalize_features
- phenograph_clustering
- rename_annotations
- spac.transformations module
- run_umap
- run_utag_clustering
- _select_input_features
- tsne
- _validate_transformation_inputs
- z_score_normalization
- add_probabilities_to_centroid
- custom_message_passing
- low_variance_filter
- _parallel_message_pass
- spac.utag_functions module
- sparse_matrix_dstack
- utag
- z_score
- annotation_category_relations
- check_annotation
- check_column_name
- check_distances
- check_feature
- check_label
- check_list_in_list
- check_table
- color_mapping
- compute_boxplot_metrics
- get_defined_color_map
- regex_search_list
- spac.utils module
- spell_out_special_characters
- text_to_others
- boxplot_interactive
- boxplot
- _css_rgb_or_hex_to_hex
- dimensionality_reduction_plot
- heatmap
- hierarchical_heatmap
- histogram
- interactive_spatial_plot
- _ordered_unique_figs
- plot_ripley_l
- _plot_spatial_distance_dispatch
- _prepare_spatial_distance_data
- present_summary_as_figure
- present_summary_as_html
- relational_heatmap
- spac.visualization module
- sankey_plot
- spatial_plot
- threshold_heatmap
- tsne_plot
- visualize_2D_scatter
- visualize_nearest_neighbor