spac
spac modules
add_pin_color_rules
add_rescaled_features
append_annotation
bin2cat
calculate_centroid
combine_annotations
combine_dfs
concatinate_regions
downsample_cells
ingest_cells
load_csv_files
rescale_features
spac.data_utils module
append_annotation
ingest_cells
concatinate_regions
rescale_features
add_rescaled_features
subtract_min_per_region
subtract_min_quantile
load_csv_files
select_values
_select_values_dataframe
_select_values_anndata
downsample_cells
calculate_centroid
bin2cat
combine_dfs
add_pin_color_rules
combine_annotations
summarize_dataframe
_select_values_anndata
_select_values_dataframe
select_values
subtract_min_per_region
subtract_min_quantile
summarize_dataframe
apply_phenotypes
assign_manual_phenotypes
combine_phenotypes
decode_phenotype
generate_phenotypes_dict
is_binary_0_1
spac.phenotyping module
is_binary_0_1
decode_phenotype
generate_phenotypes_dict
apply_phenotypes
combine_phenotypes
assign_manual_phenotypes
calculate_nearest_neighbor
_neighborhood_profile_core
neighborhood_profile
ripley_l
spac.spatial_analysis module
spatial_interaction
ripley_l
neighborhood_profile
_neighborhood_profile_core
calculate_nearest_neighbor
spatial_interaction
apply_per_batch
arcsinh_transformation_core
arcsinh_transformation
batch_normalize
get_cluster_info
knn_clustering
normalize_features_core
normalize_features
phenograph_clustering
rename_annotations
spac.transformations module
phenograph_clustering
knn_clustering
get_cluster_info
tsne
run_umap
_validate_transformation_inputs
_select_input_features
batch_normalize
rename_annotations
normalize_features
normalize_features_core
arcsinh_transformation
arcsinh_transformation_core
z_score_normalization
apply_per_batch
run_utag_clustering
run_umap
run_utag_clustering
_select_input_features
tsne
_validate_transformation_inputs
z_score_normalization
add_probabilities_to_centroid
custom_message_passing
low_variance_filter
_parallel_message_pass
spac.utag_functions module
z_score
sparse_matrix_dstack
_parallel_message_pass
custom_message_passing
low_variance_filter
add_probabilities_to_centroid
utag
sparse_matrix_dstack
utag
z_score
annotation_category_relations
check_annotation
check_column_name
check_distances
check_feature
check_label
check_list_in_list
check_table
color_mapping
compute_boxplot_metrics
get_defined_color_map
regex_search_list
spac.utils module
regex_search_list
check_list_in_list
check_table
check_annotation
check_feature
check_column_name
check_distances
text_to_others
annotation_category_relations
color_mapping
check_label
spell_out_special_characters
get_defined_color_map
compute_boxplot_metrics
spell_out_special_characters
text_to_others
boxplot_interactive
boxplot
_css_rgb_or_hex_to_hex
dimensionality_reduction_plot
heatmap
hierarchical_heatmap
histogram
interactive_spatial_plot
_ordered_unique_figs
plot_ripley_l
_plot_spatial_distance_dispatch
_prepare_spatial_distance_data
present_summary_as_figure
present_summary_as_html
relational_heatmap
spac.visualization module
visualize_2D_scatter
dimensionality_reduction_plot
tsne_plot
histogram
heatmap
hierarchical_heatmap
threshold_heatmap
spatial_plot
boxplot
boxplot_interactive
interactive_spatial_plot
sankey_plot
relational_heatmap
plot_ripley_l
_prepare_spatial_distance_data
_plot_spatial_distance_dispatch
_css_rgb_or_hex_to_hex
_ordered_unique_figs
visualize_nearest_neighbor
present_summary_as_html
present_summary_as_figure
sankey_plot
spatial_plot
threshold_heatmap
tsne_plot
visualize_2D_scatter
visualize_nearest_neighbor
spac
spac modules
spac.data_utils module
_select_values_anndata
View page source
_select_values_anndata
spac.data_utils.
_select_values_anndata
(
data
,
annotation
,
values
,
exclude_values
)
[source]